Class HomologeneTools
- java.lang.Object
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- org.biojava.bio.program.homologene.HomologeneTools
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public class HomologeneTools extends java.lang.Object
Homologene is a NCBI dataset that curates sets of orthologues from the reference model ogranisms.This class is a Collection of methods for handling data from the Homologene dataset.
- Author:
- David Huen
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Constructor Summary
Constructors Constructor Description HomologeneTools()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static Taxon
createTaxon(int taxonID, java.lang.String description)
add a Taxonstatic Taxon
getTaxon(int taxonID)
get the Taxon corresponding to this Taxon IDstatic void
instantiateDB(java.net.URL url, HomologeneBuilder builder)
instantiate a HomologeneDB.
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Method Detail
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getTaxon
public static Taxon getTaxon(int taxonID)
get the Taxon corresponding to this Taxon ID
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createTaxon
public static Taxon createTaxon(int taxonID, java.lang.String description) throws DuplicateTaxonException
add a Taxon- Throws:
DuplicateTaxonException
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instantiateDB
public static void instantiateDB(java.net.URL url, HomologeneBuilder builder) throws javax.naming.OperationNotSupportedException, java.io.FileNotFoundException, java.io.IOException
instantiate a HomologeneDB.Currently, only file protocol support is available.
- Throws:
javax.naming.OperationNotSupportedException
java.io.FileNotFoundException
java.io.IOException
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