Package org.biojava.bio.structure.gui.util
Some utility classes for the protein structure GUIs. Possible start classes are one level higher at org.biojava.bio.structure.gui.BiojavaJmol, and org.biojava.bio.structure.gui.AlignmentGui.
-
Interface Summary Interface Description StructurePairSelector To be implemented by JPanels that are part of the GUI to trigger structure aligmnents. -
Class Summary Class Description AlignedPosition AlignmentCalc A class that obtains two structures via DAS and aligns them This is done in a separate thread.AlternativeAlignmentFrame a frame showing the alternative alignments, which are the result of a structure superimpositionCoordManager a class that manages the conversion of sequence coordinate system to JPanel drawing coordinatesMenuCreator Create the menu for BiojavaJmolPDBDirPanel A class to define where a structure for the alignment is coming fromPDBServerPanel A class to define where a structure for the alignment is coming fromPDBUploadPanel A JPanel to upload 2 PDB files.SequenceMouseListener a mouse listener for the AbstractChainRenderer class it listens to all mouse events and triggeres appropriate SequenceListener and FeatureListener eventsSequenceScalePanel A class that draws a Sequence as a rectangle, a scale display over it.