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bool | Open (const String &filename) |
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void | OpenStub () |
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bool | Create (const String &filename) |
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bool | isOpen () |
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void | Close () |
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void | Rewind () |
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bool | NextSection () |
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bool | NextEntry () |
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bool | NextBaseEntry () |
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void | BeginSection (const String §ionLabel, int sectionLength) |
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void | EndSection () |
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void | WriteEntry (int outputPosition) |
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char | GetReference (int position, char defaultBase) |
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int | GetDepth (int position) |
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const double * | GetLikelihoods (int position) |
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const unsigned char * | GetLogLikelihoods (int position) |
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int | GetMapQuality (int position) |
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static const double * | GetDefaultLikelihoods () |
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static const unsigned char * | GetDefaultLogLikelihoods () |
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static int | GenotypeIndex (int base1, int base2) |
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bool | isStub |
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IFILE | handle |
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String | header |
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String | label |
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int | sections |
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int | currentSection |
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int | maxPosition |
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bool | endOfSection |
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glfEntry | data |
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int | position |
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double | likelihoods [10] |
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String | indelSequence [2] |
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const char * | errorMsg |
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Definition at line 72 of file glfHandler.h.
The documentation for this class was generated from the following files: